Some tools developed for research

Scripts/tools used in publications

Giovannoni SJ, Halsey KH, Saw J, Muslin O, Suffridge CP, Sun J, Lee CP, Moore ER, Temperton B, Noell SE (2019). A Parasitic Arsenic Cycle That Shuttles Energy from Phytoplankton to Heterotrophic Bacterioplankton. MBio. 10(2). pii: e00246-19. https://bitbucket.org/jimmysaw/arsenic/src/master/osu_plot_TARA_arsenate_reductases_map.py

Saw JH, Nunoura T, Hirai M, Takaki Y, Parsons R, Michelsen M, Longnecker K, Kujawinski EB, Stepanauskas R, Landry Z, Carlson CA, Giovannoni SJ (2019). Pangenomics reveal diversification of enzyme families and niche specialization in globally abundant SAR202 bacteria. bioRxiv. https://bitbucket.org/jimmysaw/sar202_pangenomics

Free Software Fridays!

https://github.com/jimmysaw/fsf

A collection of some possibly useful scripts I am sharing publicly on github.


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